Inferring variant-specific effective reproduction numbers from combined case and sequencing data.
(2026 Jul 9)
Elife 14():
Figgins MD, Bedford T

SARS-CoV-2 saltational events are recurrent and trace to persistent human infections.
(2026 Jun 19)
bioRxiv
Tran-Kiem C, Kistler K, Hisner R, Bedford T

Strain-specific differences in the response to egg-derived versus recombinant protein influenza vaccines.
(2026 Jun 23)
J Virol 100(6): e0031726
Loes AN, Tarabi RAL, Li SH, Atkinson RK, Huddleston J, Kikawa C, Griffiths T, Drapeau EM, Wong S-S, Cheng SMS, Leung NHL, Cobey S, Cowling BJ, Bedford T, Hensley SE, Bloom JD

Viral introductions and return to baseline sexual behaviors maintain low-level mpox incidence in Los Angeles.
(2026 Apr 17)
Nat Commun 17(1):
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Nextstrain automates real-time phylodynamic analysis of open data for endemic and emerging pathogens.
(2026 Mar 26)
bioRxiv
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